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2/3 des fonctions des gènes humains accessibles sur le net

 
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M.O.P.
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Inscrit le: 11 Mar 2004
Messages: 3224

MessagePosté le: Ven 23 Avr 2004 20:24    Sujet du message: 2/3 des fonctions des gènes humains accessibles sur le net Répondre en citant

Plus de deux tiers des fonctions des gènes humains ont deja ete decodees, et toutes sont accessibles sur le net,

sous cette adresse.

Citation:
http://www.jbirc.aist.go.jp/hinv/index.jsp


H-Invitational Database (H-InvDB) is a human gene database, with integrative annotation of 41,118 full-length cDNA clones currently available from six high throughput cDNA sequencing projects. This database represents 21,037 cDNA clusters describing their gene structures, functions, novel alternative splicing isoforms, non-coding functional RNAs, functional domains, sub-cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs in relation with orphan diseases, gene expression profiling, and comparative results with mouse full-length cDNAs in the context of molecular evolution.





About H-Invitational project

"Human Full-Length cDNA Annotation Invitational"
(H-Invitational)
August 25 - September 3, 2002
- Systematic Identification of Human Genes and its Biological Significance -

Co-organized by JBIRC and DDBJ/NIG

Goals of H-Invitational


Coordination of full-length cDNA sequencing and annotation projects world-wide
Collection of a "unique" set of high-quality cDNA clones with manually curated annotation under the unified criteria
Creation of a database representing and tools to present an integrated view to the wider scientific public
Scientific findings through the database construction

History of the H-Invitational

March 3-5, 2002
Pre H-Invitational I
May 17, 2002
Strategic meeting

Jun 24-28, 2002
Pre H-Invitational II (Consensus of criteria)

Aug 25- Sep 3, 2002
H-Invitational (Odaiba Marathon)

Organizations participating in H-Invitational

Hosted by
Japan Biological Information Research Center (JBIRC)
and
DNA Data Bank of Japan (DDBJ), National Institute of Genetics (NIG)


Cooperated by


CBRC
CHGC
CNRS
DKFZ
DOE
EBI
Hitachi Ltd., Central Research Laboratory
HUGO Gene Nomenclature Committee
Japan Atomic Energy Research Institute
Karolinska Institute
Kazusa DNA Research Institute
Keio University
KRIBB
Kyoto University
Kyushu University
Lawrence Berkeley National Laboratory
Ludwig Institute of Cancer Research
Medical College of Wisconsin
MIPS
Murdoch University
Nagoya University
National Insititute of Infectious Diseases
National Institute of Genetics
NCBI
NCI
Osaka University
Reverse Proteomics Research Institute
Riken
Royal Institute of Technology
RZPD
Sanger Institute
SIB
South African Bioinformatics Institute
Taisho Pharmaceutical Co., Ltd.
The Institute for Genomic Research
The Pennsylvania State University
The University of Tokyo
Tokyo Institute of Technology
Tokyo Medical and Dental University
University College London
University of Cincinnati
University of Iowa


The H-Invitational Dataset

Organization Entries
KDRI 2,000
FLJ*/KDRI 348
FLJ/IMSUT 12,585
FLJ/HRI 8,066
DKFZ/MIPS 5,555
MGC/NIH 11,806
CHGC 758
Total: 41,118

A total of 41,118 cDNAs were collected.
Six DNA Research Centers and DDBJ conducted a data freeze on July 15, 2002.
NCBI has supplied their latest genome assembly (build 34).
EBI provided a non-redundant SWISSPROT/TrEMBL protein set.
*Full-Length Long Japan (FLJ) Project


Acknowledgements

The financial support was given from:

JBIC (Japan Biological Informatics Consortium, Japan)
METI (Ministry of Economy, Trade, and Industry, Japan)
MEXT (Ministry of Education, Science, Sports, and Culture, Japan)
NIH (National Institutes of Health, US)
DOE (Department of Energy, US)
CNRS (Centre National de la Recherche Scientifique, France)

Affiliations for authors:
1, Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-41-6 Aomi, Koto-ku, Tokyo 135-0064, Japan;

2, Human Genome Center, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokane-dai, Minato-ku Tokyo 108-8639, Japan;

3, EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom;

4, Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan;

5, Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, Time24 Bldg. 10F, 2-45 Aomi, Koto-ku, Tokyo 135-0064, Japan;

6, BITS Co., Ltd., 537-1-103 Namiki, Yata, Mishima 411-0801, Japan;

7, Functional Genomics Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-41-6 Aomi, Koto-ku, Tokyo 135-0064, Japan;

8, Quantum Bioinformatics Group, Center for Promotion of Computational Science and Engineering, Japan Atomic Energy Research Institute, 8-1 Umemidai, Kizu-cho, Souraku-gun, Kyoto 619-0215, Japan;

9, Reverse Proteomics Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0812, Japan;

10, Central Research Laboratory, Hitachi, Ltd., 1-280 Higashi-koigakubo, Kokubunji-shi, Tokyo 185-8601, Japan;

11, Bioinformatics Center, Institure for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan;

12, CNRS, Laboratorie de Physique Mathematique, 34 Montpellier, France;

13, National Center for Biotechnology Information, National Library of Medicine, National Institute of Health, 8600 Rockville Pike Bethesda, MD 20894, USA;

14, The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom;

15, National Cancer Institute, National Institute of Health, 31/10A07, 9000 Rockville Pike, Bethesda, MD 20892-2580, USA;

16, Medical College of Wisconsin, 8701 Watertown Plank Road Milwaukee, WI 53226 USA;

17, Korea Research Institute of Bioscience and Biotechnology, P.O. Box 115, Yusong, Taejeon, 305-600, Korea;

18, Center for Genomics and Bioinformatics, Karolinska Institute, Berzelius väg 35, B326b 171 77 Stockholm, Sweden;

19, Sino-French Laboratory in Life Sciences and Genomics, 197 Rui-Jin Er Road, Shanghai 200025, China;

20, MIPS-Institute for Bioinformatics at GSF-National Research Center for Environment and Health, Ingolstäter Landstraße 1 D-85746 Neuherberg, Germany;

21, Centre for Bioinformatics and Biological Computing School of Information Technology Murdoch University, Murdoch Western Australia 6150;

22, The University of Iowa, MEBRF Iowa City, IA 52242 USA;

23, Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan;

24, HUGO Gene Nomenclature Committee, Galton Lab, Wolfson House, University College London, 4 Stephenson Way, London NW1 2HE, U.K.;

25, Genome Science Laboratory, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan;

26, Ludwig Institute of Cancer Research, Rua Prof. Antonio Prudente, 109 - 4, Andar 01509-010 Sao Paulo, SP, Brazil;

27, Genexpress - CNRS - Functional Genomics and Systemic Biology for Health and LORIA, FRE 2571, 7, rue Guy Moquet, BP8, 94801 Villejuif Cedex, France;

28, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA;

29, Dept. of Bioinformatics, Medical Research Institute, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan;

30, Swiss Institute of Bioinformatics, CMU - 1, rue Michel-Servet, CH - 1211 Geneva 4, Switzerland;

31, Chinese National Human Genome Center at Shanghai, 250 Bi-Bo Road Zhangjiang High-tech Park Shanghai 201203 China;

32, Division of Genetic Resources, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan;

33, Graduate School of Frontier Sciences, Department of Integrated Biosciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba 277-8562, Japan;

34, Department of Primary Care and Population Sciences and the Institute of Child Health, University College London, The Holborn Union Building, Whittington Campus, Highgate Hill, London N19 3UA, U.K.;

35, Department of Genetic Information, Division of Molecular Life Science, School of Medicine, Tokai University, Bohseidai, Isehara, Kanagawa 259-1193, Japan;

36, South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville, WP 7535 South Africa;

37, Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu-shi, Chiba 292-0812, Japan;

38, RZPD Resource Center for Genome Research, Im Neuenheimer Feld 506 69120 Heidelberg Germany;

39, Molecular Genome Analysis German Cancer Research Center - DKFZ, Im Neuenheimer Feld 505 D-69129 Heidelberg Germany;

40, The Pennsylvania State University, University Park, PA 16802;

41, Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-3 Machikaneyama-cho, Toyonaka-shi, Osaka 560-8531, Japan;

42, Department of Molecular Biology, Keio University School of Medicine, 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan;

43, Computational Biology Research Center, 2-41-6 Aomi, Koto-ku, Tokyo 135-0064, Japan;

44, Department of Biological Sciences, Graduate School of Bioscience and Biotechnology Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan;

45, Japan Science and Technology Corporation BIRD, 5-3 Yonbancho, Chiyoda-ku, Tokyo 102-8666, Japan;

46, Dept. Population Genetics, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan;

47, Global Scientific Information and Computing Center, Tokyo Institute of Technology 2-12-1 O-okayama, Meguro-ku, Tokyo 152-8550, Japan;

48, Tokyo Research Laboratories, Kyowa Hakko Kogyo Co., Ltd, 3-6-6 Asahi-machi, Machida-shi, Tokyo 194-8533, Japan;

49, Molecular Biology Laboratory, Medicinal Research Laboratories, Taisho Pharmaceutical Co., Ltd., 1-403 Yoshino-cho, Kita-ku, Saitama-shi, Saitama 331-9530, Japan;

50, National Institutes of Health National Center for Biotechnology Info., Bldg. 38A, Room 8N805 8600 Rockville Pike Bethesda, MD 20894 USA;

51, Human Genome Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan;

52, Columbia University and Columbia Genome Center, 1150 St Nicholas Ave, Room 520-C New York, NY 10032 USA;

53, Department of Biotechnology, Royal Institute of Technology, S-106 91 Stockholm, Sweden;

54, US Department of Energy Office of Biological & Environmental Research Biology Division & Genome Task Group, SC-72/Germantown Building, 1000 Independence Avenue, SW, Washington, D.C. 20585-1290 USA;

55, Division of Biological Science Graduate School of Science Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan;

56, The Institute for Genomic Research, 9712 Medical Center Drive Rockville, Maryland 20850, USA;

57, Center for Genome Information, Department of Environmental Health, University of Cincinnati, 110 Kettering Laboratory, 3223 Eden Avenure, Cincinnati, OH 45267-0056, USA;

58, Shanghai Institute of Hematology, Rui-Jin Hospital, affiliated to Shanghai Second Medical University, 197 Rui-Jin Road Shanghai, 200025 China;

59, Medical Institute of Bioregulation, Kyushu University, 1-3-1 Umade, Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan;

60, Department of Genetics, The Graduate University for Advanced Studies, 1111 Yata, Mishima. Shizuoka 411-8540, Japan
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M.O.P.
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Messages: 3224

MessagePosté le: Ven 23 Avr 2004 23:11    Sujet du message: Répondre en citant

Exemple: Chromosome 1

http://www.jbirc.aist.go.jp/hinv/g-integra/cgi-bin/f_genemap.cgi?species=H.sapiens&chromosome=01&action=new&start=60000001&kb_tick=1000&reverse=no
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